pi0 (version 1.3-250)

lfdr and ppee: Local False Discovery Rates (lfdr), i.e., Posterior Probability of Equivalent Expression (ppee) for gene expression profiling data.

Description

These functions return pi0*(null test statistic density)/(marginal test statistic density).

Usage

lfdr(object, ...)
ppee(object, ...)
## S3 method for class 'default':
lfdr(object, ...)## S3 method for class 'parncpt':
lfdr(object, ...)## S3 method for class 'sparncpt':
lfdr(object, ...)## S3 method for class 'nparncpt':
lfdr(object, ...)## S3 method for class 'nparncpp':
lfdr(object, ...)## S3 method for class 'CBUM':
lfdr(object, ...)## S3 method for class 'znormix':
lfdr(object, ...)## S3 method for class 'convest':
lfdr(object, ...)## S3 method for class 'discTMix':
lfdr(object, ...)

Arguments

object

an object of corresponding classes.

...

Other arguments currently not used.

Value

• A numeric vector of lfdr.

See Also

parncpt, nparncpt, sparncpt, nparncpp, fdr, CBUM, znormix, convest, discTMix